敲除PaLoc毒力岛的无毒性艰难梭菌菌株的构建Knockout of PaLoc Toxicity Loci to Construct Non-toxic C. difficile Strain
饶凤琴;程玉梅;吴昌学;王义;崔古贞;齐晓岚;洪伟;
RAO Fengqin;CHENG Yumei;WU Changxue;WANG Yi;CUI Guzhen;QI Xiaolan;HONG Wei;Key Laboratory of Endemic and Ethnic Diseases (Ministry of Education), Key Laboratory of Medical Molecular Biology,Guizhou Medical University;Department of Critical Care Medicine, the Affiliated Hospital of Guizhou Medical University;Department of Biosystems Engineering, Auburn University;School of Basic Medical Sciences, Guizhou Medical University;
摘要(Abstract):
目的:使用CRISPR-Cfp1系统敲除艰难梭菌毒性(PaLoc)毒力基因岛,构建无毒性艰难梭菌菌株。方法:使用分子克隆方法,构建针对PaLoc毒力岛的基因打靶质粒pWH53;将pWH53质粒转化艰难梭菌630菌株后,诱导Cpf1蛋白表达,PCR筛选发生双交换的PaLoc敲除突变株,测序验证设计位点是否发生等位双交换。结果:PCR结果显示,获得的16株转化子中有8株为敲除PaLoc突变株,阳性率为50%;测序结果显示,获得的8株敲除PaLoc突变株均在设计位点发生了等位双交换。结论:成功构建艰难梭菌毒性毒力岛敲除PaLoc突变株。
Objective: To construct a PaLoc loci deleted mutant of C. difficile based on the CRISPR-Cfp1 system and obtain a non-toxic C. difficile strain. Methods: The standard molecular cloning method was used to construct the gene targeting pWH53 against PaLoc loci(virulence island). After conjugation of the pWH53 plasmid into C. difficile 630 strain, Cpf1 protein expression was induced, and a double-exchanged PaLoc knockout mutant strain was screened by colony PCR, allelic double exchange at the design site was verified by sequencing. Results: The results of clony PCR showed that 8 of the 16 transformants were PaLoc knockout mutants with a positive rate of 50%. The sequencing results showed that the ΔPaLoc mutant had an allelic double exchange at the design site. Conclusion: The C. difficile ΔPaLoc mutant was successfully constructed.
关键词(KeyWords):
艰难梭菌;CRISPR-Cpf1系统;PaLoc毒力岛;基因敲除;活菌疫苗;毒性基因;梭菌感染;载体;质粒
Clostridioides difficile;CRISPR-Cpf1 system;PaLoc loci;gene knockout;live vaccine;toxic gene;Clostridium difficile infection;vector;plasmid
基金项目(Foundation): 国家自然科学基金(31560318;31601012;31760318);; 贵州省科技计划项目[黔科合平台人才(2017)5652]
作者(Authors):
饶凤琴;程玉梅;吴昌学;王义;崔古贞;齐晓岚;洪伟;
RAO Fengqin;CHENG Yumei;WU Changxue;WANG Yi;CUI Guzhen;QI Xiaolan;HONG Wei;Key Laboratory of Endemic and Ethnic Diseases (Ministry of Education), Key Laboratory of Medical Molecular Biology,Guizhou Medical University;Department of Critical Care Medicine, the Affiliated Hospital of Guizhou Medical University;Department of Biosystems Engineering, Auburn University;School of Basic Medical Sciences, Guizhou Medical University;
DOI: 10.19367/j.cnki.1000-2707.2019.10.003
参考文献(References):
- [1] HALL I C,OTOOLE E.Intestinal flora in new-born infants with a description of a new pathogenic anaerobe,Bacillus difficilis[J].American Journal of Diseases of Children,1935,49(2):390-402.
- [2] COLLINS D A,ELLIOTT B ,RILEY T V.Molecular methods for detecting and typing of Clostridium difficile[J].Pathology,2015,47(3):211-218.
- [3] FREEMAN J,BAUER M P,BAINES S D,et al.The changing epidemiology of Clostridium difficile infections[J].Clin Microbiol Rev,2010,23(3):529-549.
- [4] He M,MIYAJIMA F,Roberts P,et al.Emergence and global spread of epidemic healthcare-associated Clostridium difficile[J].Nat Genet,2013,45(1):109-113.
- [5] HSU P D,LANDER E S ,ZHANG F.Development and applications of CRISPR-Cas9 for genome engineering[J].Cell,2014,157(6):1262-1278.
- [6] WOOLSTON B M,EMERSON D F,CURRIE D H,et al.Rediverting carbon flux in Clostridium ljungdahlii using CRISPR interference (CRISPRi)[J].Metab Eng,2018,48:243-253.
- [7] XU R,QIN R,LI H,et al.Generation of targeted mutant rice using a CRISPR-Cpf1 system[J].Plant Biotechnology Journal,2017,15:713-717.
- [8] WASELS F,JEAN-MARIE J,COLLAS F,et al.A two-plasmid inducible CRISPR/Cas9 genome editing tool for Clostridium acetobutylicum[J].J Microbiol Methods,2017,140:5-11.
- [9] WANG S,DONG S,WANG P,et al.Genome editing in Clostridium saccharoperbutylacetonicum N1-4 with the CRISPR-Cas9 system[J].Applied and Environmental Microbiology,2017,83:1-16.
- [10]MORENO-MATEOS M A,FERNANDEZ J P,ROUET R,et al.CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing[J].Nature Communications,2017,8:2024.
- [11]LIU Q,GAO R,LI J,et al.Development of a genome-editing CRISPR/Cas9 system in thermophilic fungal Myceliophthora species and its application to hyper-cellulase production strain engineering[J].Biotechnology for Biofuels,2017,10:1.
- [12]KIM H,KIM S T,RYU J,et al.CRISPR/Cpf1-mediated DNA-free plant genome editing[J].Nature Communications,2017,8:14406.
- [13]JIANG Y,QIAN F,YANG J,et al.CRISPR-Cpf1 assisted genome editing of Corynebacterium glutamicum[J].Nature Communications,2017,8:15179.
- [14]NISSIM L,PERLI S D,FRIDKIN A,et al.Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells[J].Molecular Cell,2014,54:698-710.
- [15]ZETSCHE B,HEIDENREICH M,MOHANRAJU P,et al.Multiplex gene editing by CRISPR-Cpf1 using a single crRNA array[J].Nature Biotechnology,2017,35:31-34.
- [16]JOUNG J,KONERMANN S,GOOTENBERG J S,et al.Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening[J].Nature protocols,2017,12:828-863.
- [17]ZETSCHE B,GOOTENBERG J S,ABUDAYYEH O O,et al.Cpf1 is a single RNA-Guided endonuclease of a class 2 CRISPR-Cas system[J].Cell,2015,163:759-771.
- [18]SHMAKOV S,ABUDAYYEH O O,MAKAROVA K S,et al.Discovery and functional characterization of diverse class 2 CRISPR-Cas systems[J].Molecular Cell,2015,60:385-397.
- [19]JIANG W,BIKARD D,COX D,et al.RNA-guided editing of bacterial genomes using CRISPR-Cas systems[J].Nature Biotechnology,2013,31:233-239.
- [20]HONG W,ZHANG J,CUI G,et al.Multiplexed CRISPR-Cpf1-Mediated genome editing in Clostridium difficile toward the understanding of pathogenesis of C.difficile infection[J].ACS Synth Biol,2018,7(6):1588-1600.
- [21]MINTON N,CARTER G,HERBERT M,et al.The development of Clostridium difficile genetic systems[J].Anaerobe,2004,10:75-84.
- [22]WANG S,HONG W,DONG S,et al.Genome engineering of Clostridium difficile using the CRISPR-Cas9 system[J].Clin Microbiol Infect,2018,24(10):1095-1099.
- [23]ROBERTS A P,HENNEQUIN C,ELMORE M,et al.Development of an integrative vector for the expression of antisense RNA in Clostridium difficile[J].Journal of Microbiological Methods,2003,55:617-624.
- [24]HEAP J T,PENNINGTON O J,CARTMAN S T,et al.The ClosTron:A universal gene knock-out system for the genus Clostridium[J].Journal of Microbiological Methods,2007,70:452-464.
- [25]HEAP J T,KUEHNE S A,EHSAAN M,et al.The clos tron:mutagenesis in Clostridium refined and streamlined[J].Journal of Microbiological Methods,2010,80:49-55.
- [26]CARTMAN S T,KELLY M L,HEEG D,et al.Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between the tcdC genotype and toxin production[J].Applied and Environmental Microbiology,2012,78:4683-4690.
- [27]HEAP J T,EHSAAN M,COOKSLEY C M,et al.Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker[J].Nucleic Acids Research,2012,40(8) :59.
- [28]Janoir C.Virulence factors of Clostridium difficile and their role during infection[J].Anaerobe,2016,37 :13-24.
文章评论(Comment):
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- 艰难梭菌
- CRISPR-Cpf1系统
- PaLoc毒力岛
- 基因敲除
- 活菌疫苗
- 毒性基因
- 梭菌感染
- 载体
- 质粒
Clostridioides difficile - CRISPR-Cpf1 system
- PaLoc loci
- gene knockout
- live vaccine
- toxic gene
- Clostridium difficile infection
- vector
- plasmid
- 饶凤琴
- 程玉梅
- 吴昌学
- 王义
- 崔古贞
- 齐晓岚
- 洪伟
RAO Fengqin- CHENG Yumei
- WU Changxue
- WANG Yi
- CUI Guzhen
- QI Xiaolan
- HONG Wei
- Key Laboratory of Endemic and Ethnic Diseases (Ministry of Education)
- Key Laboratory of Medical Molecular Biology
- Guizhou Medical University
- Department of Critical Care Medicine
- the Affiliated Hospital of Guizhou Medical University
- Department of Biosystems Engineering
- Auburn University
- School of Basic Medical Sciences
- Guizhou Medical University
- 饶凤琴
- 程玉梅
- 吴昌学
- 王义
- 崔古贞
- 齐晓岚
- 洪伟
RAO Fengqin- CHENG Yumei
- WU Changxue
- WANG Yi
- CUI Guzhen
- QI Xiaolan
- HONG Wei
- Key Laboratory of Endemic and Ethnic Diseases (Ministry of Education)
- Key Laboratory of Medical Molecular Biology
- Guizhou Medical University
- Department of Critical Care Medicine
- the Affiliated Hospital of Guizhou Medical University
- Department of Biosystems Engineering
- Auburn University
- School of Basic Medical Sciences
- Guizhou Medical University